High-Dimensional Single Cell Analysis: Mass Cytometry, by Harris G. Fienberg, Garry P. Nolan PDF

By Harris G. Fienberg, Garry P. Nolan

ISBN-10: 3642548261

ISBN-13: 9783642548260

ISBN-10: 364254827X

ISBN-13: 9783642548277

This quantity highlights the main attention-grabbing biomedical and scientific purposes of high-dimensional stream and mass cytometry. It stories present sensible methods used to accomplish high-dimensional experiments and addresses key bioinformatic thoughts for the research of knowledge units concerning dozens of parameters in thousands of unmarried cells. themes contain unmarried cellphone melanoma biology; stories of the human immunome; exploration of immunological mobilephone kinds similar to CD8+ T cells; decipherment of signaling techniques of melanoma; mass-tag mobile barcoding; research of protein interactions through proximity ligation assays; Cytobank, a platform for the research of cytometry facts; computational research of high-dimensional movement cytometric information; computational deconvolution ways for the outline of intracellular signaling dynamics and hyperspectral cytometry. All 10 chapters of this e-book were written by means of revered specialists of their fields. it truly is a useful reference booklet for either uncomplicated and medical researchers.

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Extra resources for High-Dimensional Single Cell Analysis: Mass Cytometry, Multi-parametric Flow Cytometry and Bioinformatic Techniques

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The clone yielding the best detection of antigen based on the separation of positive from negative staining was selected for further use. Based on the intensity of marker expressions in these experiments, antigens were categorized as markers of low (dim) expression, intermediate expression, or high expression. Various fluorochromes yield various amounts of emitted light, known as a quantum yield. High quantum yield fluorochromes are considered ‘bright’, whereas low quantum yield ones are considered ‘dim’.

We have used this approach for our studies over a number of years to evaluate the reproducibility of our panel (Fig. 7). Not only does this type of analysis indicate the reproducibility of the staining, but the data collected may be used to normalize experimental data. 10 Cell Function of Immunophenotypes Defined in High Dimension Flow cytometry is a tool of choice for the analysis of cellular phenotypes in the immune system. Deep phenotyping can and will identify novel leukocytic subsets, and whereas the function of these novels subsets might be inferred by lineage and marker expression, proof of function ultimately requires purification of these subsets for subsequent in vivo or in vitro testing.

Like all antibody-fluorochrome conjugates used in the panel, the amine-reactive dye was titered, and, even though the positive cells are gated out, this color was included in the compensation matrix (Fig. 6). 8 The Conundrum of How Many Cells are Needed for Data Acquisition Panels for high-dimensional immunophenotyping can be structured to provide a wide assessment of multiple lineages without in-depth analysis of each, with indepth analysis of a particular lineage of cells, or using a combination of the two.

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High-Dimensional Single Cell Analysis: Mass Cytometry, Multi-parametric Flow Cytometry and Bioinformatic Techniques by Harris G. Fienberg, Garry P. Nolan

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